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What do you mean by add more than one input neuron type? Do you mean activation function? More than one activation function per layer is not supported by Encog, or the book.
I am referring to the example in the book where the sp500 and prime rate is used as input to the network.
The example from the book could be fairly easily converted to work with Encog. Basically it is just stitching the S&P500 & prime interest data together as two neurons times the input window size. The training array produced by this example could be fed right into an Encog BasicNeuralDataSet class.
However, the best way to add the prime interest rate would be to MarketNeuralDataSet. However, it is only designed to incorporate input neurons from Yahoo Finance. It would be a good enhancement to MarketNeuralDataSet to allow it to pull data from multiple sources. This will be considered for a future enhancement.